Funded research

Grants & funded projects

Federal, commodity-board, and institutional support for our work, as principal investigator and co-investigator.

FFAR New Innovator Award

New Innovator in Food & Agriculture Research Award

Foundation for Food & Agriculture Research (FFAR)

Awarded to Dr. Samuel B. Fernandes

$448,4912025 – 2027

Breeding for rice yield and grain quality under high night-temperature conditions

USDA-NIFA-AFRI · conventional breeding, genomics & gene editing

De Guzman, C.; Srivastava, V.; Fernandes, S. B.

$585,6502024 – 2028

Leveraging co-expression networks to understand and improve genotype-by-environment interaction in genomic prediction

USDA-NIFA-AFRI · PARTNERSHIP

Bohn, M.; Hirsch, C.; Lipka, A.; Fernandes, S. B.

$719,7312024 – 2026

Integrating sensory, genomic, and metabolomic data to breed blackberries for improved flavor

USDA-NIFA-AFRI

Worthington, M.; Threlfall, R.; Fernandes, S. B.; LaFontaine, S.

$629,3922023 – 2027

Genomic prediction to enhance the efficiency of soybean breeding

Arkansas Soybean Promotion Board

Vieira, C. C.; Fernandes, S. B.

$300,0002023 – 2026

Phenotypic selection assisted by seed-level near-infrared information

Arkansas Soybean Promotion Board

Fernandes, S. B.; Vieira, C. C.

$150,0002024 – 2026

Gradient-boosting models combining genetic and environmental information to increase prediction ability in soybean

Rapid Innovation Grant — University of Arkansas Division of Agriculture

Fernandes, S. B.; Vieira, C. C.; Elli, E.

$30,0002023 – 2025
Open-source software

Software & tools

We build free, documented tools so the breeding and genetics community can use and extend our methods.

simplePHENOTYPES

An R package for simulating pleiotropic, linked, and epistatic phenotypes — widely used to benchmark GWAS and genomic-prediction methods.

SyntheticTraits

Tools for building synthetic traits that improve multi-trait genomic prediction by leveraging the co-heritability among traits.

Browse all code

Methods papers from the lab ship with open code and data. Explore our repositories and reuse them in your own research.

In the field

Study systems

Our methods are grounded in real breeding programs across staple and specialty crops.

Soybean

A cornerstone of our applied work. With partners at the University of Arkansas, we use genomic prediction, seed-level near-infrared sensing, and machine learning to make soybean selection faster and more efficient — from flood tolerance to yield.

Soybean

Rice

A staple for half the world's population. We combine conventional breeding, genomics, and gene editing to improve rice yield and grain quality under high night-time temperatures.

Rice

Maize & sorghum

Long-running model systems for our quantitative-genetics research — from genome-wide association studies and high-throughput phenotyping to genotype-by-environment prediction across multi-environment trials.

Maize

We also work with specialty and other crops — including blackberry, common bean, and eucalyptus — wherever good data and strong breeding partners meet.